PUBLICATIONS

PAPERS

  1. “Accurate Prediction of Enzymatic Degradation of Plastics by Language Models”
    S. Xu, K. Xu, A. Onoda*
    Chem. Lett. upag022 (2026). DOI: 10.1093/chemle/upag022
    Software

  2. “N-terminal dual functionalization of proteins via copper-mediated [3 + 2] cycloaddition of triazolecarbaldehyde with maleimide”
    Y. Zhang, K. Odani, A. Onoda*
    Chem. Lett. 54(12) upaf221 (2025). DOI: 10.1093/chemle/upaf221

  3. “Facile and Additive-Free Synthesis of Chitosan-Catechol Adhesives with Enhanced Adhesive Strength: Performance Evaluation for Wood and Skin Binding”
    M. Kojima, J. Noda, S. Seno, G. Kamwezi, Y. Nagaoka, H. Kono, R. Martinez, A. Onoda*
    ACS Omega 10(40) 47237-47244 (2025). DOI: 10.1021/acsomega.5c06017

  4. “Enhanced Adsorption and Enzymatic Hydrolysis of Polyethylene Terephthalate by Cutinase with an N-Terminal Hydrophobic Tether”
    M. Shuvo, D. Ribitsch, G. Gübitz, S. Seno, T. Uchihashi, A. Onoda*
    ACS Sustainable Chem. Eng. 13(42) 17846-17855 (2025). DOI: 10.1021/acssuschemeng.5c05212

  5. “N-Terminal modification of aromatic tether in cutinase enhances degradation of polyethylene terephthalate powder and fabrics ”
    M. Shuvo, D. Ribitsch, G. Gübitz, S. Seno, A. Onoda*
    Chem. Lett. 54 upaf121 (2025). DOI: 10.1093/chemle/upaf121

  6. “Accurate and Rapid Prediction of Protein pKa: Protein Language Models Reveal the Sequence–pKa Relationship”
    S. Xu, A. Onoda*
    J. Chem. Theory Comput. 21(7) 3752-3764 (2025). DOI: 10.1021/acs.jctc.4c01288
    Software

  7. “PsiPartition: Improved Site Partitioning for Genomic Data by Parameterized Sorting Indices and Bayesian Optimization”
    S. Xu, A. Onoda*
    J. Mol. Evol. 92 874–890 (2024). DOI: 10.1007/s00239-024-10215-7
    Software
    Press release
    Press release
    Media

  8. “Accurate and Fast Prediction of Intrinsically Disordered Protein by Multiple Protein Language Models and Ensemble Learning”
    S. Xu, A. Onoda*
    J. Chem. Inf. Model. 64 2901–2911 (2024). DOI: 10.1021/acs.jcim.3c01202
    Software

  9. “Cu, Fe, N-doped Carbon Nanotubes Prepared through Silica Coating for Selective Oxygen Reduction to Water in Acidic Media”
    M. Kato*, D. Abe, S. Xie, S. Sato, N. Fujibayashi, K. Matsumoto, A. Onoda, T. Hayashi, T. Mitsui, K. Fujiwara, T. Yamamoto, Y. Einaga, C. A. Tadgell, Y. Kato, K. Asakura, I. Yagi*
    ChemCatChem in press (2024). DOI: 10.1002/cctc.202400017

  10. “Evolutionary Engineering of a Cp*Rh(III) Complex-Linked Artificial Metalloenzyme with a Chimeric β-Barrel Protein Scaffold”
    S. Kato, A. Onoda*, U. Schwaneberg, T. Hayashi
    J. Am. Chem. Soc. 145 8285–8290 (2023). Front Cover . DOI: https://doi.org/10.1021/jacs.3c00581

  11. “One-Step Preparation of Fe/N/C Single-Atom Catalysts Containing Fe−N4 Sites from an Iron Complex Precursor with 5,6,7,8-Tetraphenyl-1,12-Diazatriphenylene Ligands”
    K. Matsumoto, M. Kato, I. Yagi, S. Xie, K. Asakura, S. Noro, N. Tohnai, S. Campidelli, T. Hayashi*, A. Onoda*
    Chemistry Eur. J. 28 e2021035 (2022). DOI: 10.1002/chem.202103545
    HUSCAP

  12. “Electrocatalytic Hydrogen Evolution Reaction Promoted by Co/N/C Catalysts with Co–Nx Active Sites Derived from Precursors Forming N-Doped Graphene Nanoribbons”
    K. Matsumoto, A. Onoda* S. Campidelli, T. Hayashi*
    Bull. Chem. Soc. Jpn 94 2898–2905 (2021). DOI: 10.1246/bcsj.20210302

  13. “Thermally Controlled Construction of Fe–Nx Active Sites on the Edge of a Graphene Nanoribbon for an Electrocatalytic Oxygen Reduction Reaction”
    K. Matsumoto, A. Onoda*, T. Kitano, T. Sakata, H. Yasuda, S. Campidelli, T. Hayashi*
    ACS Appl. Mater. Interfaces in press. (2021). DOI: 10.1021/acsami.0c21321

  14. “Construction of a Whole-cell Biohybrid Catalyst using a Cp*Rh(III)-Dithiophosphate Complex as a Precursor of a Metal Cofactor”
    S. Kato, A. Onoda,* A.R. Grimm, U. Schwaneberg, T. Hayashi*
    J. Inorg. Biochem. 216 111352 (2021). DOI: 10.1016/j.jinorgbio.2020.111352

  15. “Directed Evolution of a Cp*RhIII-Linked Biohybrid Catalyst Based on a Screening Platform with Affinity Purification”
    S. Kato, A. Onoda,* N. Taniguchi, U. Schwaneberg, T. Hayashi*
    ChemBioChem 22 679-685 (2021). Front Cover . DOI: 10.1002/cbic.202000681

  16. “Incorporation of a Cp*Rh(III)-dithiophosphate Cofactor with Latent Activity into a Protein Scaffold Generates a Biohybrid Catalyst Promoting C(sp2)–H Bond Functionalization”
    S. Kato, A. Onoda,* A. R. Grimm, K. Tachikawa, U. Schwaneberg, T. Hayashi*
    Inog. Chem. 59 14457–14463 (2020). DOI: 10.1002/cbic.201900692

  17. “Chiral Paddle-wheel Diruthenium Complexes for Asymmetric Catalysis”
    T. Miyazawa, T. Suzuki, T. Kumagai, K. Takizawa, T. Kikuchi, S. Kato, A. Onoda, A. T. Hayashi, Y. Kamei, F. Kamiyama, M. Anada, M. Kojima, T. Yoshino, S. Matsunaga*
    Nat. Chem. (2020). DOI: 10.1038/s41929-020-00513-w

  18. “Triazolecarbaldehyde Reagents for One-step N-Terminal Protein Modification”
    A. Onoda,* N. Inoue, E. Sumiyoshi, T. Hayashi*
    ChemBioChem 21 1274–1278 (2020). Front Cover . DOI: 10.1002/cbic.201900692